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- Status: Open.#222 In HelikarLab/COMO;
Include default objective functions in COMO documentation during model building
state:openThis is still being plannedThis is still being plannedsubsystem:jupyter-notebookRelates to the jupyter notebookRelates to the jupyter notebooktype:cosmeticsThis is a visual issueThis is a visual issuetype:usabilityThis is impacting end-user usabilityThis is impacting end-user usabilityStatus: Open.#114 In HelikarLab/COMO;- Status: Open.#104 In HelikarLab/COMO;
Step 6 fails silently
state:in-progressThis is being worked onThis is being worked onsubsystem:jupyter-notebookRelates to the jupyter notebookRelates to the jupyter notebooktype:bugThis isn't workingThis isn't workingtype:usabilityThis is impacting end-user usabilityThis is impacting end-user usabilityStatus: Open.#92 In HelikarLab/COMO;Write a series of reports giving a summary of parameters used
state:openThis is still being plannedThis is still being plannedsubsystem:jupyter-notebookRelates to the jupyter notebookRelates to the jupyter notebooksubsystem:pythonRelates to Python filesRelates to Python filesStatus: Open.#91 In HelikarLab/COMO;Import common-name metabolites in model creation (step 4)
state:openThis is still being plannedThis is still being plannedsubsystem:jupyter-notebookRelates to the jupyter notebookRelates to the jupyter notebooksubsystem:pythonRelates to Python filesRelates to Python filesStatus: Open.#90 In HelikarLab/COMO;Allow reading of SBML models
state:openThis is still being plannedThis is still being plannedsubsystem:pythonRelates to Python filesRelates to Python filesStatus: Open.#78 In HelikarLab/COMO;Update to Python 3.11
state:openThis is still being plannedThis is still being plannedsubsystem:pythonRelates to Python filesRelates to Python filestype:developmentThis is an issue with MADRID backendThis is an issue with MADRID backendtype:performanceThis isn't working as well or as fast as it shouldThis isn't working as well or as fast as it shouldStatus: Open.#69 In HelikarLab/COMO;Rerun flux balance analysis (cobra)
state:openThis is still being plannedThis is still being plannedsubsystem:jupyter-notebookRelates to the jupyter notebookRelates to the jupyter notebooktype:bugThis isn't workingThis isn't workingtype:usabilityThis is impacting end-user usabilityThis is impacting end-user usabilityStatus: Open.#62 In HelikarLab/COMO;Default regulation values should default to +/- 0.58
state:openThis is still being plannedThis is still being plannedsubsystem:pythonRelates to Python filesRelates to Python filestype:performanceThis isn't working as well or as fast as it shouldThis isn't working as well or as fast as it shouldtype:usabilityThis is impacting end-user usabilityThis is impacting end-user usabilityStatus: Open.#58 In HelikarLab/COMO;Linters and Type Checkers
state:openThis is still being plannedThis is still being plannedsubsystem:otherRelates to an unspecified part of the projectRelates to an unspecified part of the projecttype:developmentThis is an issue with MADRID backendThis is an issue with MADRID backendStatus: Open.#47 In HelikarLab/COMO;Use CSV files instead of Excel Files
state:openThis is still being plannedThis is still being plannedsubsystem:jupyter-notebookRelates to the jupyter notebookRelates to the jupyter notebooktype:cosmeticsThis is a visual issueThis is a visual issuetype:usabilityThis is impacting end-user usabilityThis is impacting end-user usabilityStatus: Open.#46 In HelikarLab/COMO;